publications

a non-comprehensive and probably not updated list of my publications.

For a comprehensive and updated list of publications, you can visit my Google Scholar profile.

2024

  1. ArXiv
    Molecular causality in the advent of foundation models
    Sebastian Lobentanzer ,  Pablo Rodriguez-Mier ,  Stefan Bauer , and 1 more author
    arXiv preprint arXiv:2401.09558, 2024

2023

  1. Suggesting disease associations for overlooked metabolites using literature from metabolic neighbors
    Maxime Delmas ,  Olivier Filangi ,  Christophe Duperier , and 6 more authors
    GigaScience, 2023
  2. Genome scale metabolic network modelling for metabolic profile predictions
    Juliette Cooke ,  Maxime Delmas ,  Cecilia Wieder , and 6 more authors
    bioRxiv, 2023
  3. BioRxiv
    LIANA+: an all-in-one cell-cell communication framework
    Daniel Dimitrov ,  Philipp Sven Lars Schafer ,  Elias Farr , and 6 more authors
    BioRxiv, 2023
  4. Uncertainty quantification in medicine science: The next big step
    Ziad Akram Ali Hammouri ,  Pablo Rodriguez Mier ,  Paulo Felix , and 4 more authors
    Archivos de bronconeumologia, 2023

2022

  1. Avoiding the Misuse of Pathway Analysis Tools in Environmental Metabolomics
    Cecilia Wieder ,  Jacob G Bundy ,  Clement Frainay , and 7 more authors
    Environmental Science & Technology, 2022

2021

  1. PlosComp
    DEXOM: Diversity-based enumeration of optimal context-specific metabolic networks
    Pablo Rodriguez-Mier ,  Nathalie Poupin ,  Carlo Blasio , and 2 more authors
    PLoS Computational Biology, 2021
  2. Pathway analysis in metabolomics: Recommendations for the use of over-representation analysis
    Cecilia Wieder ,  Clement Frainay ,  Nathalie Poupin , and 7 more authors
    PLoS computational biology, 2021
  3. CompBiomed
    COVID-19: Estimation of the transmission dynamics in Spain using a stochastic simulator and black-box optimization techniques
    Marcos Matabuena ,  Pablo Rodriguez-Mier ,  Carlos Garcia-Meixide , and 1 more author
    Computer Methods and Programs in Biomedicine, 2021
  4. Pathway analysis in metabolomics: pitfalls and best practice for the use of over-representation analysis
    Cecilia Wieder ,  Clement Frainay ,  Nathalie Poupin , and 7 more authors
    bioRxiv, 2021

2020

  1. Robustness assessment in computer-assisted liquid chromatography procedures based on desirability functions
    S Trinanes ,  P Rodriguez-Mier ,  C Cobas , and 3 more authors
    Journal of Chromatography A, 2020

2019

  1. Feature selection and evolutionary rule learning for Big Data in smart building energy management
    Pablo Rodriguez-Mier ,  Manuel Mucientes ,  and  Alberto Bugarin
    Cognitive Computation, 2019

2018

  1. Significant wave height and energy flux estimation with a Genetic Fuzzy System for regression
    L Cornejo-Bueno ,  P Rodriguez-Mier ,  M Mucientes , and 2 more authors
    Ocean Engineering, 2018

2015

  1. An Integrated Semantic Web Service Discovery and Composition Framework
    Pablo Rodriguez Mier ,  Carlos Pedrinaci ,  Manuel Lama , and 1 more author
    IEEE Transactions on Services Computing, 2015
  2. Hybrid optimization algorithm for large-scale QoS-aware service composition
    Pablo Rodriguez-Mier ,  Manuel Mucientes ,  and  Manuel Lama
    IEEE transactions on services computing, 2015